Publications

* indicates equal contribution

Kuo, M., Lê Cao, K.-A., Kodikara, S.*, Mao, J.*, Sankaran, K.* (2025). phylobar: an R package for multiresolution compositional barplots in omics studies. bioRxiv. [Co-senior author]

Zhang, X., Mao, J.* & Lê Cao, K.-A.* (2025). CellDiffusion: a generative model to annotate single-cell and spatial RNA-seq using bulk references. bioRxiv. [Co-senior author]

Kodikara, S.*, Mao, J.*, San Valentin, E. M. D., Do, K.-A., Reyes-Gibby, C. & Lê Cao, K.-A. (2025). Oral microbial signatures of head and neck cancer patients highlight diverse longitudinal patterns of oral mucositis severity. bioRxiv. [Co-first author]

Deng, Y., Mao, J.*, Choi, J.* & Lê Cao, K.-A.* (2025). NeighbourNet: Scalable cell-specific co-expression networks for granular regulatory pattern discovery. bioRxiv. [Co-senior author]

Mao, J., Choi, J.* & Lê Cao, K.-A.* (2025). Φ-Space ST: a platform-agnostic method to identify cell states in spatial transcriptomics studies. bioRxiv. Seminar recording

Mao, J., Deng, Y. & Lê Cao, K.-A. (2024). Φ-Space: Continuous phenotyping of single-cell multi-omics data. Genome Biology.

Hesse S., Mao J., Hadziahmetovic A., Offensperger F., Rojas Ringeling F., Monteagudo-Mesas P., Frauenstein A., Canzar S., Meissner F., Zimmer R., Lê Cao K.-A., Klein C. (Under Review). A molecular atlas of human granulopoiesis. [Under review at Nature Communications] Atlas website

Camirand-Lemyre, F.*, Delaigle, A.* and Mao, J.* (Under Review). Nonparametric regression esti- mation for streaming data. [Under review at Biometrika. Author ranked alphabetically]