Plot PhiSpace scores as a heatmap

Plot PhiSpace scores as a heatmap

plotPhiSpaceHeatMap(
  PhiSpaceScore,
  phenoDict = NULL,
  phenotypes = NULL,
  queryLabs = NULL,
  refLvls = NULL,
  queryLvls = NULL,
  cluster_columns = FALSE,
  cluster_rows = FALSE,
  show_row_names = FALSE,
  show_column_names = TRUE,
  row_title_rot = 0,
  ...
)

Arguments

PhiSpaceScore

Matrix.

phenoDict

A named list, categorising columns (phenotypes) in PhiSpaceScore. Total number of elements have to be identical to number of columns of PhiSpaceScore.

phenotypes

Optional. Types of phenotypes. If provided, has to be of the same length as phenoDict.

queryLabs

Character vector.

refLvls

Character vector.

queryLvls

Character vector.

cluster_columns

Logic.

cluster_rows

Logic.

show_row_names

Logic.

show_column_names

Logic.

row_title_rot

Rotation (angle) of row titles, inherited from ComplexHeatmap::Heatmap

...

Additional parameters adjusting the ComplexHeatmap object

Value

A heatmap of PhiSpace scores.