Convert discrete annotations to dummy variable matrices.

Convert discrete annotations to dummy variable matrices.

codeY(sce, phenotypes, method = c("-1,1", "0,1"))

Arguments

sce

SingleCellExperiment object.

phenotypes

Which phenotype annotations (e.g. cell types) to convert.

method

Which coding to use, either (-1,1) or (0,1).

Value

YY

A dummy variable matrix encoding discrete annotation